阴道润滑障碍中的lncRNA-mRNA共表达网络的整合分析及生物学功能预测
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南京医科大学附属妇产医院(南京市妇幼保健院)

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国家自然科学基金项目(面上项目,重点项目,重大项目)


Integrative analysis and biological function prediction of lncRNA-mRNA co-expression network in vaginal lubrication disorder
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Women’s Hospital of Nanjing Medical University (Nanjing Maternity and Child Health Care Hospital)

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    [摘要] 目的 通过构建阴道润滑障碍女性阴道上皮组织差异表达lncRNA-mRNA共表达网络,探索阴道润滑障碍患者的潜在发病机制。方法 利用以?log2FC?≥2且校正后p值<0.05,鉴别阴道润滑障碍和正常对照组之间的长链非编码RNA以及mRNA的表达谱,利用Cytoscape软件构建差异表达lncRNA及差异表达mRNA网络,采用Gene Ontology(GO)和KEGG Pathway分析共表达网络中mRNA的生物学功能。结果 通过下一代测序技术,根据?log2FC?≥2且校正后p值<0.05标准筛选出LD组和正常对照组中共计499条上调表达的lncRNA、337条下调表达的lncRNA,以及1582条上调表达mRNA、633条下调表达的mRNA。随后,我们通过其中100个lncRNA与311个mRNA构建了基于差异表达的lncRNA和mRNA的共表达网络。最后,共表达网络的功能富集分析表明mRNA主要与心肌相关的疾病和功能有关。结论 LD的发病机制可能与血液循环功能障碍、局部肌肉功能障碍以及cGMP通路等有关,需要相关研究来进一步证实。

    Abstract:

    [Abstract] Objective To use bioinformatics methods to screen the differentially long non-coding RNA (LncRNA) in vaginal epithelial tissues of women with vaginal lubrication disorder (LD), and to construct patients with vaginal lubrication disorder based on the hypothesis of lncRNA-mRNA coexpression network to further explore the potential pathogenesis of patients with vaginal lubrication disorders, in order to provide new ideas for the diagnosis and treatment of patients with vaginal lubrication disorders. Methods Using ?log2FC?≥2 and Correct pValue<0.05 to identify the expression profile of long-chain non-coding RNA and mRNA between vaginal lubrication disorders and normal control group, using Cytoscape software to construct a lncRNA-mRNA network of candidate lncRNAs, using Gene Ontology (GO) And KEGG Pathway to analyze the biological functions of mRNAs in coexpression network. Results A total of 499 up-regulated lncRNAs, 337 down-regulated lncRNAs, and 1582 up-regulated mRNAs, 633 were selected in the LD group and the normal control group based on the next-generation sequencing technology according to the criteria of ?log2FC?≥2 and Correct pValue<0.05. Down-regulate the expressed mRNA. Subsequently, we constructed a lncRNA-mRNA coexpression network based on differentially expressed lncRNA and mRNA through 100 lncRNA and 311 mRNA. Finally, the functional enrichment analysis of the lncRNA-mRNA network shows that mRNA is mainly related to myocardial-related diseases and functions. Conclusion The pathogenesis of LD may be related to blood circulation dysfunction, local muscle dysfunction, and cGMP pathway, etc. This requires more studies at the cellular level, animal level and even human level to further confirm.

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  • 收稿日期:2021-03-25
  • 最后修改日期:2021-06-30
  • 录用日期:2021-11-02
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