Detection of tumor driver gene TP53 R248W by CRISPR/Cas13a
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R446.7

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    Abstract:

    Objective:To establish a CRISPR/Cas13a based method for detecting TP53 R248W mutant molecules. Methods:TP53 R248W mutant plasmid was constructed by Over⁃lap PCR using TP53 wild⁃type plasmid as template. The CRISPR/Cas13a method for the detection of TP53 R248W variant was initially established by optimizing the amplification product size,amplification technology, the length and concentration of crRNA. The sensitivity of CRISPR/Cas13a method was evaluated by TP53 R248W variants with different mutation rates and simulated plasma ctDNA. Results:The size of the amplified product detected by CRISPR/Cas13a was about 368 bp. The concentration of crRNA had influence upon the detection intensity of CRISPR/Cas13a. In the range of 0.05~0.25μmol/L, the higher the concentration of crRNA,the higher the detection intensity of CRISPR/Cas13a was detected. The sensitivity of CRISPR/ Cas13a in detecting TP53 R248W variants was 104 copies/μL,and the minimum mutation rate was 0.01% . Conclusion:The established CRISPR/Cas13a method has the advantages of rapid,simple,sensitive and specific,and provides a new technology for the detection of TP53 R248W variant in tissues and plasma.

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KUANG Zhenzhan, XIAO Bin, SUN Zhaohui, LUO Rong, HE Jiewen, LI Linhai. Detection of tumor driver gene TP53 R248W by CRISPR/Cas13a[J].,2022,42(8):1119-1124.

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  • Online: August 07,2022
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