m5C相关基因预测肾透明细胞癌的预后
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南京医科大学

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m5C-related genes predict prognosis in Kidney Renal Clear Cell Carcinoma
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1.NanJing Medical University;2.Lijie

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    摘要:

    目的:本研究旨在利用肿瘤基因组图谱(TCGA)数据库中的数据,构建m5C相关基因组成的生存预后模型,分析了与肾透明细胞癌生存有关的独立预后影响因素来预测肾透明细胞癌患者的预后。方法:从TCGA数据库下载肾透明细胞癌患者资料,从已发表的文献中获取m5C相关基因并分析了它们在肿瘤组和对照组之间的差异表达。然后对这些基因进行共识聚类分析以揭示m5C相关基因与肾透明细胞癌预后之间的关系。通过单变量Cox分析和Lasso-Cox回归分析构建出生存预后模型并分析与肾透明细胞癌相关的预后影响因素。最后进行GO和KEGG富集分析进一步探索生物功能和潜在的信号通路。结果:我们发现m5C相关基因在肾透明细胞癌肿瘤组和正常组之间存在差异性表达。共识聚类分析结果显示集群1的肾透明细胞癌患者的预后优于集群2。构建的生存预后模型将肾透明细胞癌分为高风险组和低风险组,单变量和多变量Cox分析显示分级和分期可能是肾透明细胞癌的独立预后因素。而GO和KEGG分析显示m5C-RNA修饰有助于调节肾透明细胞癌的进展。结论:根据研究,我们构建的m5C相关基因的生存预后模型可以预测肾透明细胞癌患者的预后。

    Abstract:

    Objective: This study aims to use the data in the Cancer Genome Atlas (TCGA) database to construct a survival prognostic model composed of M5C-related genes, and to analyze the independent prognostic factors related to the survival of clear cell renal cell carcinoma to predict Prognosis of patients with renal clear cell carcinoma.Methods: The data of patients with renal clear cell carcinoma were downloaded from the TCGA database, m5C-related genes were obtained from the published literature, and their differential expression between the tumor group and the control group was analyzed. Consensus clustering analysis of these genes was then performed to reveal the relationship between m5C-related genes and prognosis in clear cell renal cell carcinoma. A survival prognostic model was constructed by univariate Cox analysis and Lasso-Cox regression analysis to analyze the prognostic factors associated with renal clear cell carcinoma. Finally, GO and KEGG enrichment analysis was performed to further explore biological functions and potential signaling pathways .Results: We found that m5C-related genes were differentially expressed between the tumor group and the normal group in renal clear cell carcinoma. The results of consensus clustering analysis showed that the prognosis of patients with clear cell renal cell carcinoma in cluster 1 was better than that in cluster 2. The constructed survival prognostic model divided clear cell renal cell carcinoma into high-risk group and low-risk group. Univariate and multivariate Cox analysis showed that grade and stage may be independent prognostic factors for clear cell renal cell carcinoma. GO and KEGG analysis showed that m5C-RNA modification helps to regulate the progression of renal clear cell carcinoma.Conclusion: According to the research, the survival prognostic model of M5C-related genes constructed by us can predict the prognosis of patients with clear cell renal cell carcinoma

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  • 收稿日期:2022-04-18
  • 最后修改日期:2022-05-27
  • 录用日期:2022-07-24
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