基于生物信息学分析干性相关基因TCEAL7作为胃癌预后标志物的研究
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1.南京医科大学第一附属医院;2.江苏卫生职业健康学院护理学院;3.泰州市人民医院

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国家自然科学基金项目(面上项目,重点项目,重大项目)


Bioinformatics Analysis of Stemness-Related Gene TCEAL7 as a Prognostic Factor in Gastric Cancer
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    摘要:

    背景:基于mRNA表达水平的干性指数(mRNA expression-based stemness index,mRNAsi)是描述癌症干性特征的指标。癌症的进展伴随着干性特征的获得和分化特性的逐渐消失。本文旨在胃癌(gastric cancer,GC)中找到一个与mRNAsi相关的基因,并探讨其功能。方法:通过癌症基因组图谱(The Cancer Genome Atlas,TCGA)数据库和GSE66229数据集进行生物信息学分析。通过实时定量聚合酶链反应(qRT-PCR)和免疫组织化学评估了组织和细胞系中TCEAL7的表达。采用过表达TCEAL7来研究其对GC细胞增殖、迁移和侵袭能力以及干性特征的影响。结果:TCEAL7在GC中表达下调。然而,TCEAL7的高表达与较差的预后相对应。过表达TCEAL7能够抑制GC细胞的增殖、迁移和侵袭能力,还能减弱成球能力并降低干细胞样CD44high/CD24high细胞的数量。包含临床特征和TCEAL7表达的列线图对于预测GC患者预后有很好的准确性和区分度。结论:TCEAL7被鉴定为在GC中与mRNAsi相关的预后因子,它抑制了肿瘤细胞的恶性程度,并减弱了干性特征。

    Abstract:

    Abstract Background and aim: The mRNA expression-based stemness index (mRNAsi) is an index for describing stemness features of cancer. The progression of cancer means acquisition of stemness features and progressive loss of differentiated characteristics. The aim was to find a mRNAsi-related gene in gastric cancer (GC) and explored its functions. Methods: Bioinformatics analysis were assessed by The Cancer Genome Atlas (TCGA) database and microarray GSE66229 dataset. TCEALE expression in tissues and cell lines was assessed by quantitative real-time PCR (qRT-PCR) and immunohistochemistry. Experiments of gain-of-function were employed to find the impacts of TCEAL7 on cell proliferation,migration and invasion abilities,and stemness properties of GC. Results: The expression of TCEAL7 was downregulated in GC. However,high expression of TCEAL7 was parallel with a worse prognosis. Overexpressed TCEAL7 could inhibit gastric cancer cell proliferation,migration and invasion abilities,which also attenuated spheroid formation and decreased numbers of stem-like CD44high/CD24high cells. The nomogram which included clinical features and TCEAL7 expression showed good accuracy and discrimination for predicting the prognosis of patients with GC. Conclusions: TCEAL7 was identified as mRNAsi-related prognostic factor in GC,which inhibited cellular malignancy,and impaired stemness properties.

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  • 收稿日期:2024-02-26
  • 最后修改日期:2024-05-03
  • 录用日期:2024-06-05
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