超保守癌/睾丸-LINC01424表达影响食管鳞癌的进展
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南京医科大学第一附属医院胸外科

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南京医科大学第一附属医院临床能力提升工程项目(2021-02)


Effects of ultra-conserved cancer/testis-LINC01424 on the progression of esophageal squamous cell carcinoma
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Department of Thoracic Surgery,the First Affiliated Hospital of Nanjing Medical University

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    摘要:

    目的:探究食管鳞癌特异的超保守癌/睾丸(cancer/testis,CT)-LINC01424在食管鳞癌进展中的作用。方法:利用TCGA(The Cancer Genome Atlas)及GTEx(Genotype-Tissue Expression)数据库系统筛选食管鳞癌特异的超保守CT特性的长链非编码RNA(long non-coding RNA,lncRNA),运用核质分离实验和cDNA末端快速扩增技术(rapid amplification of cDNA end, RACE)进行LINC01424细胞定位及序列鉴定;利用118对食管癌样本数据进行预后分析;下调Eca109细胞系中LINC01424,以及上调KYSE410细胞系中LINC01424后,通过CCK-8实验,平板克隆法,Transwell实验和裸鼠成瘤动物实验研究CT-LINC01424在食管鳞癌细胞中的作用;进一步应用MEM(Multi Experiment Matrix)数据库进行下游基因的探索。结果:首次鉴定出食管鳞癌特异的超保守CT-LINC01424;临床资料分析显示,CT-LINC01424与食管鳞癌较差的临床分期及预后显著相关;降低LINC01424的表达可以抑制食管鳞癌细胞的增殖、侵袭能力,过表达LINC01424则会导致相反结果;此外,LINC01424与KNTC1(Kinetochore Associated 1)存在显著共表达关系。结论:LINC01424在食管鳞癌组织中高表达,促进食管鳞癌细胞增殖和侵袭,并可能通过影响KNTC1的表达发挥其促癌的作用

    Abstract:

    Objective: To investigate the role of the esophageal squamous cancer-specific ultra-conserved cancer/testis (CT)-LINC01424 in esophageal squamous cancer progression. Methods: The TCGA (The Cancer Genome Atlas) and GTEx (Genotype-Tissue Expression) databases were used to screen the long non-coding RNA (lncRNA) with ultraconservative CT properties specific to esophageal squamous carcinoma, and the nucleoplasmic isolation assay and rapid amplification of cDNA end (RACE) were used for the cellular localization and sequence identification of LINC01424.118 pairs of esophageal cancer samples was used for the analysis of prognosis. After knocking down LINC01424 in Eca109 cell line or overexpressing LINC01424 in KYSE410 cell line, the effects of CT-LINC01424 on the esophageal squamous carcinoma was detected by CCK-8 assay, colony assay, Transwell assay, and nude micel assay; further application of MEM (Multi Experiment Matrix) database for downstream gene exploration. Results: An ultraconservative CT-LINC01424 specific for esophageal squamous carcinoma was identified. Analysis of clinical data showed that CT-LINC01424 was significantly associated with poor clinical stage and prognosis of esophageal squamous carcinoma. Knockdown of the expression of LINC01424 inhibited the proliferation and invasion of esophageal squamous carcinoma cells, while overexpression of LINC01424 resulted in the opposite result. Furthermore, the expression of LINC01424 was significantly co-expressed with KNTC1 (Kinetochore Associated 1) gene. Conclusion: LINC01424 is highly expressed in esophageal squamous carcinoma tissues, promotes the proliferation and invasion of esophageal squamous carcinoma cells, and may exert its pro-carcinogenic effects by affecting the expression of KNTC1.

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  • 收稿日期:2024-04-18
  • 最后修改日期:2024-11-04
  • 录用日期:2024-12-05
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