广谱中和新型冠状病毒及其变体的纳米抗体制备及功能研究
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1.南京医科大学附属妇产医院;2.南京医科大学附属妇产医院(南京市妇幼保健院)医学研究中心;3.南京市女性生育力保护及重塑医学重点实验室

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江苏省“333高层次人才培养工程”项目,南京市妇幼保健院“十四五”青年人才项目


Nanobody preparation and functional studies for broad-spectrum neutralization of viruses and their variants
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Grants from the 333 High-Level Talents Training Project of Jiangsu Province,The "14th Five-Year Plan" Youth Talent Project of Nanjing Maternal and Child Health Hospital

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    摘要:

    目的:开发广谱靶向严重急性呼吸系统综合征冠状病毒2(Severe acute respiratory syndrome coronavirus 2, SARS-CoV-2)及其变体的纳米抗体(Nanobody, Nb),并确立一种能够广泛用于制备广谱中和病毒及其多种变体的纳米抗体的策略。方法:使用SARS-CoV-2野生型菌株刺突蛋白的受体结合域(Receptor-binding domain,RBD)(WT-RBD)免疫羊驼,构建出纳米抗体噬菌体文库,通过Delta变体的RBD结合域(Delta-RBD)对文库进行免疫管筛选、ELISA实验等操作筛选得到纳米抗体,毕赤酵母系统表达纳米抗体并纯化,通过ELISA、生物膜干涉技术、假病毒中和实验、以及Alphafold2建模和分子对接等多种手段验证纳米抗体的性质及功能。结果:得到4个纳米抗体不仅均对WT-RBD具有较高的亲和力,还能有效地结合Delta-RBD及Omicron变体的RBD结合域(Omicron-RBD)。Nb34、Nb42和Nb45对Delta-RBD和Omicron-RBD表现出较强的结合能力,同时Nb45可以有效地中和Omicron变体的假病毒。本研究还发现这些纳米抗体能够结合SARS-CoV-2及其变体的作用机制可能与其结合RBD上的保守位点相关。结论:得到的4个纳米抗体具有防治SARS-CoV-2及其变体的巨大潜力,同时本研究中确立和使用的这种策略也可以广泛用于制备广谱中和易变异病毒及其多种变体的纳米抗体。

    Abstract:

    Objective: To produce broad-spectrum nanobodies (Nbs) targeting severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and its variants, and establish a strategy for producing Nbs broad-spectrum neutralizing the virus and its various variants. Methods: Alpacas were immunized with the receptor-binding domain (RBD) of the SARS-CoV-2 wild-type strain (WT-RBD) to construct a nanobody phage library, and the library was screened by biopanning and ELISA with the RBD of the Delta variant (Delta-RBD) to select nanobodies. The selected nanobodies were expressed and purified using the Pichia pastoris system, and their properties and functions characterized by ELISA, biolayer interferometry, pseudovirus neutralization experiments, and molecular modeling and docking. Results: The four nanobodies obtained not only have high affinity for WT-RBD, but can also effectively neutralize Delta-RBD and the RBD of the Omicron variant (Omicron-RBD). Nb34, Nb42, and Nb45 show strong binding ability to the RBD of Delta-RBD and Omicron variants, meanwhile Nb45 can effectively neutralize the pseudovirus of Omicron variants. We also found that the mechanism of these nanobodies for neutralizing SARS-CoV-2 and its variants may be related to interfering with the conserved sites on these RBD. Conclusion: The four nanobodies obtained have great potential for prevention and treatment of SARS-CoV-2 and its variants, and the strategy established in this study can also be widely used for the preparation of nanobodies broad-spectrum neutralizing viruses and their various variants.

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  • 收稿日期:2025-01-21
  • 最后修改日期:2025-07-09
  • 录用日期:2025-11-13
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