IGF2BP3通过m6A-EP300轴介导乳酸化修饰驱动三阴性乳腺癌代谢与表观遗传交互作用
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南京医科大学第一附属医院乳腺外科

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江苏省科学与技术重大专项 (BG2024026)


IGF2BP3 Drives the Metabolic-Epigenetic Crosstalk in Triple-Negative Breast Cancer Through m6A-EP300 Axis-Mediated Lactylation Modification
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Department of Breast Surgery,The First Affiliated Hospital,Nanjing Medical University, Guangzhou Road

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the Science and Technology Support Program of Jiangsu Province (BG2024026)

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    摘要:

    目的:三阴性乳腺癌(TNBC)作为缺乏雌激素受体(ER)、孕激素受体(PR)和人表皮生长因子受体2(HER2)的一类乳腺癌亚型,具有高度侵袭性和治疗抵抗性。TNBC较其他亚型更依赖糖酵解,表现为糖酵解关键酶及转运蛋白上调、葡萄糖摄取和乳酸分泌增加。这些代谢异常产生的乳酸可能促进TNBC恶性进展,但具体机制仍不明晰。转录共激活因子E1A结合蛋白p300(EP300)具有组蛋白乙酰转移酶活性,可通过乙酰化、乳酸化等表观遗传修饰机制,将代谢信号与转录调控相耦联。EP300可被乳酸诱导的组蛋白乳酸化修饰招募至促癌基因(如HIF-1α、MYC)启动子区,协同激活肿瘤增殖与转移相关通路。本研究旨在探讨乳酸对TNBC细胞恶性行为的影响,并揭示胰岛素样生长因子2 mRNA结合蛋白3(IGF2BP3)通过通过m6A依赖性方式调控EP300,进而介导代谢重编程的表观遗传机制。方法:通过外源性添加乳酸钠处理三阴性乳腺癌细胞,采用CCK8、集落形成、划痕愈合和Transwell实验检测细胞增殖与迁移能力;利用shRNA慢病毒载体构建IGF2BP3稳定敲低细胞模型,结合Western blot分析组蛋白乳酸化修饰水平;进一步通过RIP-seq、MeRIP-seq筛选IGF2BP3的m6A靶基因,并利用qRT-PCR和Western blot验证关键分子表达。结果:乳酸钠处理显著增强TNBC细胞的增殖和迁移能力,且泛乳酸化水平随乳酸浓度梯度升高而增加。IGF2BP3敲低可降低组蛋白乳酸化修饰水平。通过整合RIP-seq和MeRIP-seq数据,鉴定出699个其转录本同时被IGF2BP3特异性结合且携带m6A修饰的候选基因,这些基因显著富集于表观遗传调控和代谢相关通路。EP300转录本上IGF2BP3的结合区域与m6A修饰位点高度重合,且EP300的表达水平在IGF2BP3敲低后明显下调。结论:外源性乳酸通过泛乳酸化修饰促进TNBC的恶性进展。IGF2BP3通过m6A依赖性机制调控EP300的表达,进而介导组蛋白乳酸化修饰与代谢重编程的协同作用,最终驱动TNBC的肿瘤进展。上述发现为靶向代谢-表观遗传交互调控的新型治疗策略提供了理论依据。

    Abstract:

    Objective:?Triple-negative breast cancer (TNBC), a clinically aggressive subtype characterized by the absence of estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor 2 (HER2) expression, exhibits intrinsic therapeutic resistance and a propensity for rapid progression. TNBC displays unique metabolic reprogramming marked by heightened glycolytic dependence, manifested through upregulation of glycolytic enzymes and glucose transporters, augmented glucose uptake, and excessive lactate secretion. Emerging evidence suggests that the lactate-enriched tumor microenvironment may drive malignant progression, although the precise molecular mechanisms remain incompletely understood. The transcriptional coactivator EP300 (E1A-binding protein p300), which possesses histone acetyltransferase activity, serves as a critical epigenetic mediator by coupling metabolic cues with transcriptional regulation through post-translational modifications such as acetylation and lactylation. Mechanistically, lactate-induced histone lactylation facilitates EP300 recruitment to oncogenic promoters (e.g., HIF-1α, MYC), thereby activating proliferation- and metastasis-associated signaling pathways. This study elucidates the functional impact of lactate on TNBC malignancy and unveils an m6A-dependent epigenetic mechanism through which insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3) orchestrates metabolic reprogramming via regulation of EP300.Methods:?TNBC cells were treated with exogenous sodium lactate supplementation to investigate its oncogenic effects. Cellular proliferative capacity was systematically assessed using CCK-8 assay, while clonogenic potential was evaluated through colony formation analysis. Two-dimensional migration dynamics were quantified via scratch wound healing assay, and three-dimensional invasive potential was determined using Transwell chambers. To establish IGF2BP3-knockdown models, lentiviral-delivered shRNA constructs were employed for stable gene silencing. Histone lactylation modification levels were analyzed by Western blotting. Genome-wide identification of IGF2BP3-associated m6A targets was performed through RNA immunoprecipitation sequencing (RIP-seq) and m6A-specific methylated RNA immunoprecipitation sequencing (MeRIP-seq). Key regulatory molecules were validated at transcriptional and protein levels using quantitative reverse transcription PCR (qRT-PCR) and Western blotting, respectively.Results: Sodium lactate treatment potentiated TNBC cell proliferation and migratory capacity, with pan-lactylation levels exhibiting concentration-dependent augmentation. Mechanistic interrogation revealed that IGF2BP3 depletion markedly attenuated histone lactylation modifications. Integrative analysis of RIP-seq and MeRIP-seq datasets identified 699 candidate genes whose transcripts were both specifically bound by IGF2BP3 and harbored m6A modifications. Pathway enrichment analysis demonstrated significant association of these genes with epigenetic regulation and metabolic pathways. Spatial mapping identified substantial overlap between IGF2BP3-binding regions and m6A modification sites on EP300 transcripts. Functional validation confirmed significant downregulation of EP300 expression at transcriptional and protein levels following IGF2BP3 knockdown.Conclusion: Exogenous lactate drives TNBC malignant progression by orchestrating pan-lactylation modifications. Mechanistically, IGF2BP3 governs EP300 expression through m6A-dependent post-transcriptional regulation, thereby mediating a synergistic interplay between histone lactylation and metabolic reprogramming that ultimately propels tumor progression. These findings lay the mechanistic foundation for developing innovative therapeutic strategies targeting the metabolic-epigenetic crosstalk in TNBC.

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  • 收稿日期:2025-04-21
  • 最后修改日期:2025-05-14
  • 录用日期:2025-07-02
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