成年小鼠ECSIT 3′⁃UTR的鉴定及功能分析
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国家自然科学基金(82070234)


Identification and functional analysis of ECSIT 3′⁃UTR in adult mice
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    摘要:

    目的:鉴定成年小鼠Toll途径进化保守信号介导因子(evolutionarily conserved signaling intermediate in Toll pathways,ECSIT)的3′非翻译区(3′-untranslated region,3′-UTR)序列,并在细胞中验证非编码RNA对ECSIT表达的影响。方法:采用RACE技术克隆得到小鼠ECSIT 3′-UTR序列,并与基因组数据库进行比对;预测ECSIT 3′-UTR可能结合的微小RNA(microRNA,miRNA),并针对ECSIT的全长序列设计小干扰RNA(siRNA);通过Western blot分别检测使用不同miRNA和siRNA干扰后,细胞中ECSIT的表达。结果:成功鉴定了346 bp的小鼠ECSIT 3′-UTR,与NCBI上序列一致率达到99%;在细胞中miR-7-5p和siRNA1、2可以干扰ECSIT的表达。结论:成功鉴定得到成年小鼠心脏ECSIT mRNA 3′-UTR序列,该非编码区可作为非编码RNA的调控区域,为进一步从分子水平探明ECSIT在小鼠生长发育及疾病中的作用提供科学依据。

    Abstract:

    Objective:This study aims to identify the 3′-UTR sequence of the ECSIT spliceosome in adult mice,and verify the effects of non-coding RNA on ECSIT expression. Methods:Using RACE technology to clone the mice ECSIT 3′-UTR non-coding region sequence,and further compare with the genomic database. Predict the possible binding microRNAs,and design siRNA against the full-length sequence of ECSIT. The expression levels of ECSIT in cells were determined by Western blot after using different microRNAs and siRNAs. Results:The results show that the 346 bp mouse ECSIT 3′-UTR was successfully identified and the sequence consistency rate with NCBI reached 99%. In cells,miR-7-5p and siRNA1,2 can interfere with the expression of ECSIT. Conclusion:These results shows that the 3′-UTR sequence of mouse ECSIT mRNA was successfully identified and this non-coding region can be used as a regulatory region of non-coding RNA,which can provide a scientific basis at the molecular level for further proving research of ECSIT in mouse growth and pathophysiological condition.

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周小蓉,陆 霞,李建涛,阙玲琍,李跃华.成年小鼠ECSIT 3′⁃UTR的鉴定及功能分析[J].南京医科大学学报(自然科学版),2021,(7):937-942

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  • 收稿日期:2021-04-30
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  • 在线发布日期: 2021-07-25
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