润滑障碍中的lncRNA⁃mRNA共表达网络的构建及功能预测
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国家自然科学基金项目(81771572)


Construction and function prediction of lncRNA⁃mRNA co⁃expression network in lubrication disorder
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    目的:通过构建阴道润滑障碍(lubrication disorder,LD)女性阴道上皮组织差异表达lncRNA-mRNA共表达网络,探索LD患者的潜在发病机制。方法:利用以|Log2FC|≥2且校正后P值<0.05,鉴别LD和正常对照组之间的长链非编码RNA(long non-coding RNA,LncRNA)以及mRNA的表达谱,利用Cytoscape软件构建差异表达lncRNA及差异表达mRNA网络,采用Gene Ontology(GO)和KEGG Pathway分析共表达网络中mRNA的生物学功能。结果:通过下一代测序技术,根据|Log2FC|≥2且校正后P值<0.05标准筛选出LD组和正常对照组中共计499条上调表达的lncRNA、337条下调表达的lncRNA,以及1 582条上调表达mRNA、633条下调表达的mRNA。随后,通过其中100个lncRNA与311个mRNA构建了基于差异表达的lncRNA和mRNA的共表达网络。最后,共表达网络的功能富集分析表明mRNA主要与心肌相关的疾病和功能有关。结论:LD的发病机制可能与血液循环功能障碍、局部肌肉功能障碍以及cGMP通路等有关,需要相关研究来进一步证实。

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    Objective:This study aims to use bioinformatics methods to screen the differentially long non-coding RNA(LncRNA) in vaginal epithelial tissues of women with vaginal lubrication disorder(LD),and to construct patients with vaginal lubrication disorder based on the hypothesis of lncRNA-mRNA co-expression network to further explore the potential pathogenesis of patients with vaginal LD,in order to provide new ideas for the diagnosis and treatment of patients with vaginal LD. Methods:Using |Log2FC|≥2 and correct P ralue<0.05,the expression profile of long-chain non-coding RNA and mRNA between LD group and normal control group were identified. Using Cytoscape software,a lncRNA-mRNA network of candidate lncRNAs was constructed. Using Gene Ontology(GO)and KEGG Pathway,the biological functions of mRNAs in co-expression network were analyzed. Results:A total of 499 up-regulated lncRNAs,337 down-regulated lncRNAs,and 1 582 up-regulated mRNAs,633 were selected in the LD group and the normal control group based on the next-generation sequencing technology according to the criteria of |Log2FC|≥2 and correct P ralue<0.05. Subsequently,a lncRNA-mRNA co-expression network was constructed based on differentially expressed lncRNA and mRNA through 100 lncRNAs and 311 mRNAs. Finally,the functional enrichment analysis of the lncRNA-mRNA network showed that mRNA was mainly related to myocardial-related diseases and functions. Conclusion:The pathogenesis of LD may be related to blood circulation dysfunction,local muscle dysfunction,and cGMP pathway,etc. This requires further studies at the cellular level,animal level and even human level to confirm.

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刘天娇,张晶晶,马洁桦,潘连军,阮红杰.润滑障碍中的lncRNA⁃mRNA共表达网络的构建及功能预测[J].南京医科大学学报(自然科学版),2021,(11):1585-1591

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  • 收稿日期:2021-04-13
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  • 在线发布日期: 2021-12-13
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